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1

Honeysuckle aqueous extract and induced let-7a suppress dengue virus type 2 replication and pathogenesis

Lee, Ying-Ray, Yeh, Siao-Fen, Ruan, Xiao-Ming, Zhang, Hao, Hsu, Sheng-Da, Huang, Hsien-Da, Hsieh, Chang-Chi, Lin, Yee-Shin, Yeh, Trai-Ming, Liu, Hsiao-Sheng, Gan, Dai-Di

Journal:

Journal of Ethnopharmacology

Year:

2017

Language:

english

File:

PDF, 1.51 MB

english, 2017

2

Evaluation of whole exome sequencing by targeted gene sequencing and Sanger sequencing

Chang, Ya-Sian, Huang, Hsien-Da, Yeh, Kun-Tu, Chang, Jan-Gowth

Journal:

Clinica Chimica Acta

Year:

2017

Language:

english

File:

PDF, 549 KB

english, 2017

3

Primer design for multiplex PCR using a genetic algorithm

Li-Cheng Wu, Jorng-Tzong Horng, Hsi-Yuan Huang, Feng-Mao Lin, Hsien-Da Huang, Meng-Feng Tsai

Journal:

Soft Computing - A Fusion of Foundations, Methodologies and Applications

Year:

2007

Language:

english

File:

PDF, 399 KB

english, 2007

4

Genetic alterations in endometrial cancer by targeted next-generation sequencing

Chang, Ya-Sian, Huang, Hsien-Da, Yeh, Kun-Tu, Chang, Jan-Gowth

Journal:

Experimental and Molecular Pathology

Year:

2016

Language:

english

File:

PDF, 579 KB

english, 2016

5

Bidirectional cross-kingdom RNAi and fungal uptake of external RNAs confer plant protection

Wang, Ming, Weiberg, Arne, Lin, Feng-Mao, Thomma, Bart P. H. J., Huang, Hsien-Da, Jin, Hailing

Journal:

Year:

2016

Language:

english

File:

PDF, 6.08 MB

english, 2016

6

Long noncoding RNA TUG1 is downregulated in non-small cell lung cancer and can regulate CELF1 on binding to PRC2

Lin, Pei-Chin, Huang, Hsien-Da, Chang, Chun-Chi, Chang, Ya-Sian, Yen, Ju-Chen, Lee, Chien-Chih, Chang, Wen-Hsin, Liu, Ta-Chih, Chang, Jan-Gowth

Journal:

Year:

2016

Language:

english

File:

PDF, 1.79 MB

english, 2016

7

Source identification of HIV-1 transmission in three lawsuits Using Ultra-Deep pyrosequencing and phylogenetic analysis

Li, Wei-You, Huang, Szu-Wei, Wang, Sheng-Fan, Liu, Hsin-Fu, Chou, Chih-Hung, Wu, Shang-Jung, Huang, Hsien-Da, Lu, Po-Liang, Fann, Cathy S.J., Chen, Marcelo, Chen, Yen-Hsu, Chen, Yi-Ming Arthur

Journal:

Journal of Microbiology, Immunology and Infection

Year:

2020

Language:

english

File:

PDF, 1.98 MB

english, 2020

8

MicroRNA-122, a tumor suppressor microRNA that regulates intrahepatic metastasis of hepatocellular carcinoma

Wei-Chih Tsai, Paul Wei-Che Hsu, Tsung-Ching Lai, Gar-Yang Chau, Ching-Wen Lin, Chun-Ming Chen, Chien-Der Lin, Yu-Lun Liao, Jui-Ling Wang, Yat-Pang Chau, Ming-Ta Hsu, Michael Hsiao, Hsien-Da Huang, An

Journal:

Year:

2009

Language:

english

File:

PDF, 2.17 MB

english, 2009

9

Computing motif correlations in proteins

Jorng-Tzong Horng, Hsien-Da Huang, Shih-Hsien Wang, Ming-You Chen, Shir-Ly Huang, Jenn-Kang Hwang

Journal:

Journal of Computational Chemistry

Year:

2003

Language:

english

File:

PDF, 407 KB

english, 2003

10

Incorporating hidden Markov models for identifying protein kinase-specific phosphorylation sites

Hsien-Da Huang, Tzong-Yi Lee, Shih-Wei Tzeng, Li-Cheng Wu, Jorng-Tzong Horng, Ann-Ping Tsou, Kuan-Tsae Huang

Journal:

Journal of Computational Chemistry

Year:

2005

Language:

english

File:

PDF, 441 KB

english, 2005

11

Detection of discriminative sequence motifs in proteins obtained from prokaryotes grown at various temperatures

Li-Cheng Wu, Jorng-Tzong Horng, Shir-Ly Huang, Hsien-Da Huang, Baw-Jhiune Liu

Journal:

Journal of Computational Chemistry

Year:

2006

Language:

english

File:

PDF, 464 KB

english, 2006

12

An agent-based system to discover protein–protein interactions, identify protein complexes and proteins with multiple peptide mass fingerprints

Tzong-Yi Lee, Jorng-Tzong Horng, Hsueh-Fen Juan, Hsien-Da Huang, Li-Cheng Wu, Meng-Fong Tsai, Hsuan-Cheng Huang

Journal:

Journal of Computational Chemistry

Year:

2006

Language:

english

File:

PDF, 789 KB

english, 2006

13

Incorporating structural characteristics for identification of protein methylation sites

Dray-Ming Shien, Tzong-Yi Lee, Wen-Chi Chang, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 912 KB

english, 2009

14

Incorporating support vector machine for identifying protein tyrosine sulfation sites

Wen-Chi Chang, Tzong-Yi Lee, Dray-Ming Shien, Justin Bo-Kai Hsu, Jorng-Tzong Horng, Po-Chiang Hsu, Ting-Yuan Wang, Hsien-Da Huang, Rong-Long Pan

Journal:

Journal of Computational Chemistry

Year:

2009

Language:

english

File:

PDF, 417 KB

english, 2009

15

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites

Tzong-Yi Lee, Justin Bo-Kai Hsu, Feng-Mao Lin, Wen-Chi Chang, Po-Chiang Hsu, Hsien-Da Huang

Journal:

Journal of Computational Chemistry

Year:

2010

Language:

english

File:

PDF, 1.29 MB

english, 2010

16

Detecting LTR structures in human genomic sequences using profile hidden Markov models

Li-Ching Wu, Hsien-Da Huang, Yu-Chung Chang, Ying-Chun Lee, Jorng-Tzong Horng

Journal:

Expert Systems with Applications

Year:

2009

Language:

english

File:

PDF, 157 KB

english, 2009

17

An expert system to predict protein thermostability using decision tree

Li-Cheng Wu, Jian-Xin Lee, Hsien-Da Huang, Baw-Juine Liu, Jorng-Tzong Horng

Journal:

Expert Systems with Applications

Year:

2009

Language:

english

File:

PDF, 412 KB

english, 2009

18

An expert system to identify co-regulated gene groups from time-lagged gene clusters using cell cycle expression data

Li-Ching Wu, Jhih-Long Huang, Jorng-Tzong Horng, Hsien-Da Huang

Journal:

Expert Systems with Applications

Year:

2010

Language:

english

File:

PDF, 867 KB

english, 2010

19

Prediction of small non-coding RNA in bacterial genomes using support vector machines

Tzu-Hao Chang, Li-Ching Wu, Jun-Hong Lin, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng

Journal:

Expert Systems with Applications

Year:

2010

Language:

english

File:

PDF, 414 KB

english, 2010

20

miRTar: an integrated system for identifying miRNA-target interactions in human

Justin Bo-Kai Hsu, Chih-Min Chiu, Sheng-Da Hsu, Wei-Yun Huang, Chia-Hung Chien, Tzong-Yi Lee, Hsien-Da Huang

Journal:

BMC Bioinformatics

Year:

2011

Language:

english

File:

PDF, 1.74 MB

english, 2011

21

Characterization and prediction of mRNA polyadenylation sites in human genes

Tzu-Hao Chang, Li-Ching Wu, Yu-Ting Chen, Hsien-Da Huang, Baw-Jhiune Liu, Kuang-Fu Cheng, Jorng-Tzong Horng

Journal:

Medical and Biological Engineering and Computing

Year:

2011

Language:

english

File:

PDF, 560 KB

english, 2011

22

microRNA: A Master Regulator of Cellular Processes for Bioengineering Systems

Sun, Wei, Julie Li, Yi-Shuan, Huang, Hsien-Da, Shyy, John Y-J., Chien, Shu

Journal:

Annual Review of Biomedical Engineering

Year:

2010

Language:

english

File:

PDF, 972 KB

english, 2010

23

Let-7b is a novel regulator of hepatitis C virus replication

Cheng, Ju-Chien, Yeh, Yung-Ju, Tseng, Ching-Ping, Hsu, Sheng-Da, Chang, Yu-Ling, Sakamoto, Naoya, Huang, Hsien-Da

Journal:

Cellular and Molecular Life Sciences

Year:

2012

Language:

english

File:

PDF, 717 KB

english, 2012

24

Patient delivery quality assurance for linac-based IMRT and helical tomotherapy using solid state detectors

Ngot Swan Chong, Jason J.S. Lee, Wei-Hsiang Kung, Chien-An Chen, Chen-Hsi Hsieh, Hui-Ju Tien, Chi-Ta Lin, Hsin-Pei Yeh, Le-Jung Wu, Hsien-Da Huang, Pei-Wei Shueng

Journal:

Radiation Measurements

Year:

2011

Language:

english

File:

PDF, 301 KB

english, 2011

25

Identifying the combination of genetic factors that determine susceptibility to cervical cancer

Jorng-Tzong Horng, Hu, K.C., Li-Cheng Wu, Hsien-Da Huang, Feng-Mao Lin, Huang, S.L., Lai, H.C., Chu, T.Y.

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2004

Language:

english

File:

PDF, 433 KB

english, 2004

26

Biological Data Warehousing System for Identifying Transcriptional Regulatory Sites From Gene Expressions of Microarray Data

Tsou, A.-P., Yi-Ming Sun, Chia-Lin Liu, Hsien-Da Huang, Jorng-Tzong Horng, Meng-Feng Tsai, Baw-Juine Liu

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2006

Language:

english

File:

PDF, 845 KB

english, 2006

27

Database to Dynamically Aid Probe Design for Virus Identification

Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Ann-Ping Tsou, Pak-Leong Chan, Li-Cheng Wu, Meng-Feng Tsai, Jorng-Tzong Horng

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2006

Language:

english

File:

PDF, 448 KB

english, 2006

28

Identifying Discriminative Amino Acids Within the Hemagglutinin of Human Influenza A H5N1 Virus Using a Decision Tree

Li-Ching Wu, Jorng-Tzong Horng, Hsien-Da Huang, Wei-Long Chen

Journal:

IEEE Transactions on Information Technology in Biomedicine

Year:

2008

Language:

english

File:

PDF, 1.30 MB

english, 2008

29

miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression

Wei-Chi Wang, Feng-Mao Lin, Wen-Chi Chang, Kuan-Yu Lin, Hsien-Da Huang, Na-Sheng Lin

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 1.46 MB

english, 2009

30

i-Genome: A database to summarize oligonucleotide data in genomes

Feng-Mao Lin, Hsien-Da Huang, Yu-Chung Chang, Jorng-Tzong Horng

Journal:

Year:

2004

Language:

english

File:

PDF, 615 KB

english, 2004

31

RINGdb: An integrated database for G protein-coupled receptors and regulators of G protein signaling

Yu-Ching Fang, Wei-Hsin Sun, Li-Cheng Wu, Hsien-Da Huang, Hsueh-Fen Juan, Jorng-Tzong Horng

Journal:

Year:

2006

Language:

english

File:

PDF, 562 KB

english, 2006

32

PlantPAN: Plant promoter analysis navigator, for identifying combinatorialcis-regulatory elements with distance constraint in plant gene groups

Wen-Chi Chang, Tzong-Yi Lee, Hsien-Da Huang, His-Yuan Huang, Rong-Long Pan

Journal:

Year:

2008

Language:

english

File:

PDF, 879 KB

english, 2008

33

A comprehensive resource for integrating and displaying protein post-translational modifications

Tzong-Yi Lee, Justin Bo-Kai Hsu, Wen-Chi Chang, Ting-Yuan Wang, Po-Chiang Hsu, Hsien-Da Huang

Journal:

BMC Research Notes

Year:

2009

Language:

english

File:

PDF, 987 KB

english, 2009

34

Arabidopsis Argonaute 2 Regulates Innate Immunity via miRNA393∗-Mediated Silencing of a Golgi-Localized SNARE Gene, MEMB12

Xiaoming Zhang, Hongwei Zhao, Shang Gao, Wei-Chi Wang, Surekha Katiyar-Agarwal, Hsien-Da Huang, Natasha Raikhel, Hailing Jin

Journal:

Year:

2011

Language:

english

File:

PDF, 1014 KB

english, 2011

35

EuLoc: a web-server for accurately predict protein subcellular localization in eukaryotes by incorporating various features of sequence segments into the general form of Chou’s PseAAC

Chang, Tzu-Hao, Wu, Li-Ching, Lee, Tzong-Yi, Chen, Shu-Pin, Huang, Hsien-Da, Horng, Jorng-Tzong

Journal:

Journal of Computer-Aided Molecular Design

Year:

2013

Language:

english

File:

PDF, 347 KB

english, 2013

36

TET1 Suppresses Cancer Invasion by Activating the Tissue Inhibitors of Metalloproteinases

Chih-Hung Hsu, Kai-Lin Peng, Ming-Lun Kang, Yi-Ren Chen, Yu-Chih Yang, Chin-Hsien Tsai, Chi-Shuen Chu, Yung-Ming Jeng, Yen-Ting Chen, Feng-Mao Lin, Hsien-Da Huang, Yun-Yuh Lu, Yu-Ching Teng, Shinn-Tsu

Journal:

Year:

2012

Language:

english

File:

PDF, 1.77 MB

english, 2012

37

The activation of directional stem cell motility by green light-emitting diode irradiation

Wei-Kee Ong, How-Foo Chen, Cheng-Ting Tsai, Yun-Ju Fu, Yi-Shan Wong, Da-Jen Yen, Tzu-Hao Chang, Hsien-Da Huang, Oscar Kuang-Sheng Lee, Shu Chien, Jennifer Hui-Chun Ho

Journal:

Year:

2013

Language:

english

File:

PDF, 1.49 MB

english, 2013

38

P-156 A Computational Modelling for Characterizing the Ability of Yang-Invigorating Chinese Tonic Herbs to Enhance ATP-Generation in Cardiocytes

Chao-Fang Chu, Ten-Fang Yang, Hsien-Da Huang

Journal:

CVD Prevention and Control

Year:

2009

Language:

english

File:

PDF, 53 KB

english, 2009

39

ProSplicer: a database of putative alternative splicing information derived from protein, mRNA and expressed sequence tag sequence data

Hsien-Da Huang, Jorng-Tzong Horng, Chau-Chin Lee, Baw-Jhiune Liu

Journal:

Year:

2003

Language:

english

File:

PDF, 2.77 MB

english, 2003

40

A probabilistic method to correlate ion pairs with protein thermostability

Shir-Ly Huang, Li-Cheng Wu, Hsien-Da Huang, Han-Kuen Liang…

Journal:

Applied Bioinformatics

Year:

2004

Language:

english

File:

PDF, 275 KB

english, 2004

41

lncRNAMap: A map of putative regulatory functions in the long non-coding transcriptome

Chan, Wen-Ling, Huang, Hsien-Da, Chang, Jan-Gowth

Journal:

Computational Biology and Chemistry

Year:

2014

Language:

english

File:

PDF, 2.20 MB

english, 2014

42

Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

Chiu, Chih-Min, Lin, Feng-Mao, Chang, Tzu-Hao, Huang, Wei-Chih, Liang, Chao, Yang, Ting, Wu, Wei-Yun, Yang, Tzu-Ling, Weng, Shun-Long, Huang, Hsien-Da

Journal:

Journal of Clinical Bioinformatics

Year:

2014

Language:

english

File:

PDF, 518 KB

english, 2014

43

CRP represses the CRISPR/Cas system in E scherichia coli : evidence that endogenous CRISPR spacers impede phage P1 replication

Yang, Chi-Dung, Chen, Yen-Hua, Huang, Hsi-Yuan, Huang, Hsien-Da, Tseng, Ching-Ping

Journal:

Molecular Microbiology

Year:

2014

Language:

english

File:

PDF, 3.99 MB

english, 2014

44

The effects of actin cytoskeleton perturbation on keratin intermediate filament formation in mesenchymal stem/stromal cells

Chang, Tzu-Hao, Huang, Hsien-Da, Ong, Wei-Kee, Fu, Yun-Ju, Lee, Oscar K., Chien, Shu, Ho, Jennifer H.

Journal:

Year:

2014

Language:

english

File:

PDF, 2.79 MB

english, 2014

45

Very long non-coding RNA and human disease

Chan, Wen-Ling, Chang, Ya-Sian, Yang, Wen-Kuan, Huang, Hsien-Da, Chang, Jan-Gowth

Journal:

Year:

2012

Language:

english

File:

PDF, 365 KB

english, 2012

46

Phosphoproteome profiling of the sexually transmitted pathogen Trichomonas vaginalis

Yeh, Yuan-Ming, Huang, Kuo-Yang, Richie Gan, Ruei-Chi, Huang, Hsien-Da, Wang, Tzu-Chien V., Tang, Petrus

Journal:

Journal of Microbiology, Immunology and Infection

Year:

2013

Language:

english

File:

PDF, 2.64 MB

english, 2013

47

MultiProtIdent: Identifying Proteins Using Database Search and Protein−Protein Interactions

Huang, Hsien-Da, Lee, Tzong-Yi, Wu, Li-Cheng, Lin, Feng-Mao, Juan, Hsueh-Fen, Horng, Jorng-Tzong, Tsou, Ann-Ping

Journal:

Journal of Proteome Research

Year:

2005

Language:

english

File:

PDF, 259 KB

english, 2005

48

[IEEE 7th International Symposium on Parallel Architectures, Algorithms and Networks, 2004. Proceedings. - Hong Kong, China (2004.05.12-2004.05.12)] 7th International Symposium on Parallel Architectures, Algorithms and Networks, 2004. Proceedings. - Identifying transcriptional regulatory sites in the human genome using an integrated computation

Hsien-Da Huang,, Jorng-Tzong Horng,, Yi-Ming Sun,, Ann-Ping Tsou,, Shir-Ly Huang,

Year:

2004

Language:

english

File:

PDF, 1.32 MB

english, 2004

49

[IEEE 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Taichung, Taiwan (2009.06.22-2009.06.24)] 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering - RiboSW A Web Server for Identifying RNA Riboswitches

Chang, Tzu-Hao, Wu, Li-Ching, Yeh, Chi-Ta, Chang, Cheng-Wei, Liu, Baw-Jhiune, Huang, Hsien-Da, Horng, Jorng-Tzong

Year:

2009

Language:

english

File:

PDF, 649 KB

english, 2009

50

[IEEE 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering (BIBE) - Taichung, Taiwan (2009.06.22-2009.06.24)] 2009 Ninth IEEE International Conference on Bioinformatics and BioEngineering - A Human DNA Methylation Site Predictor Based on SVM

Sun, Yi-Ming, Liao, Wei-Li, Huang, Hsien-Da, Liu, Baw-Jhiune, Chang, Cheng-Wei, Horng, Jorng-Tzong, Wu, Li-Ching

Year:

2009

Language:

english

File:

PDF, 457 KB

english, 2009